@inproceedings{ff_cwc_distr:pdp:13,
  month = feb,
  author = {Marco Aldinucci and Fabio Tordini and Maurizio Drocco and Massimo
            Torquati and Mario Coppo},
  keywords = {fastflow, bioinformatics},
  booktitle = {Proc. of Intl. Euromicro PDP 2013: Parallel Distributed and
               network-based Processing},
  url = {http://calvados.di.unipi.it/storage/paper_files/2013_cwc_d_PDP.pdf},
  abstract = {The stochastic simulation of biological systems is an increasingly
              popular technique in Bioinformatics. It is often an enlightening
              technique, especially for multi-stable systems which dynamics can
              be hardly captured with ordinary differential equations. To be
              effective, stochastic simulations should be supported by powerful
              statistical analysis tools. The simulation-analysis workflow may
              however result in being computationally expensive, thus
              compromising the interactivity required in model tuning. In this
              work we advocate the high-level design of simulators for
              stochastic systems as a vehicle for building efficient and
              portable parallel simulators. In particular, the Calculus of
              Wrapped Components (CWC) simulator, which is designed according to
              the FastFlow's pattern-based approach, is presented and discussed
              in this work. FastFlow has been extended to support also clusters
              of multi-cores with minimal coding effort, assessing the
              portability of the approach.},
  address = {Belfast, Nothern Ireland, U.K.},
  title = {Parallel stochastic simulators in system biology: the evolution of
           the species},
  publisher = {IEEE},
  year = {2013},
}

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