Chronological Overview 
 Type-Hierarchical Overview 
Formal Methods in Computing
(Most of the papers antecedent to 1995
are not included in the list)
FRAMES  NO FRAME 

14:ff:whatsapp:cibb (In proceedings)
Author(s) Marco Aldinucci, Andrea Bracciali, Tobias Marschall, Murray Patterson, Nadia Pisanti and Massimo Torquati
Title« High-Performance Haplotype Assembly »
InProc. of the 11th Intl. meeting on Computational Intelligence methods for Bioinformatics and Biostatistics (CIBB)
SeriesLNBI
Year2014
PublisherSpringer
AddressCambridge, UK
Abstract & Keywords
The problem of Haplotype Assembly is an essential step in human genome analysis. Being the well known MEC model for its solution NP-hard, it is currently addressed by using algorithms that grow exponentially with the length of DNA fragments obtained by the sequencing process. Technological improvements will reduce fragmenta- tion, increase fragment length and make such computational costs worst. WhatsHap is a recently proposed novel approach which moves complex- ity from fragment length to fragment sovrapposition, improving the per- spective of computational costs, but Haplotype Assembly still remains a demanding computational problem. A methodological approach towards high-performance computing WhatsHap is discussed in this paper.

Keywords: fastflow

BibTeX code

@inproceedings{14:ff:whatsapp:cibb,
  month = jun,
  author = {Marco Aldinucci and Andrea Bracciali and Tobias Marschall and Murray
            Patterson and Nadia Pisanti and Massimo Torquati},
  series = {{LNBI}},
  keywords = {fastflow},
  booktitle = {Proc. of the 11th Intl. meeting on Computational Intelligence
               methods for Bioinformatics and Biostatistics (CIBB)},
  abstract = {The problem of Haplotype Assembly is an essential step in human
              genome analysis. Being the well known MEC model for its solution
              NP-hard, it is currently addressed by using algorithms that grow
              exponentially with the length of DNA fragments obtained by the
              sequencing process. Technological improvements will reduce
              fragmenta- tion, increase fragment length and make such
              computational costs worst. WhatsHap is a recently proposed novel
              approach which moves complex- ity from fragment length to fragment
              sovrapposition, improving the per- spective of computational
              costs, but Haplotype Assembly still remains a demanding
              computational problem. A methodological approach towards
              high-performance computing WhatsHap is discussed in this paper. },
  address = {Cambridge, UK},
  title = {High-Performance Haplotype Assembly},
  publisher = {Springer},
  year = {2014},
}


 Chronological Overview 
 Type-Hierarchical Overview 
Formal Methods in Computing
(Most of the papers antecedent to 1995
are not included in the list)
FRAMES  NO FRAME 

This document was generated by bib2html 3.3.
(Modified by Luca Paolini, under the GNU General Public License)

Valid HTML 4.01!