cwcsim:onlinestats:ff:hibb:11 (In proceedings)
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Author(s) | Marco Aldinucci, Mario Coppo, Ferruccio Damiani, Maurizio Drocco, Eva Sciacca, Salvatore Spinella, Massimo Torquati and Angelo Troina |
Title | « On Parallelizing On-Line Statistics for Stochastic Biological Simulations » |
In | Euro-Par 2011 Workshops, Proc. of the 2st Workshop on High Performance Bioinformatics and Biomedicine (HiBB) |
Series | LNCS |
Editor(s) | Michael Alexander, Pasqua D'Ambra, Adam Belloum, George Bosilca, Mario Cannataro, Marco Danelutto, Beniamino Di Martino, Michael Gerndt, Emmanuel Jeannot, Raymond Namyst, Jean Roman, Stephen L. Scott, Jesper Larsson Träff, Geoffroy Vallée and Josef Weidendorfer |
Volume | 7156 |
Page(s) | 3-12 |
Year | 2012 |
Publisher | Springer |
Address | Bordeaux, France |
URL | http://calvados.di.unipi.it/storage/paper_files/2012_onlinestat_HiBB2011.pdf |
Abstract & Keywords |
This work concerns a general technique to enrich parallel version of stochastic simulators for biological systems with tools for on-line statistical analysis of the results. In particular, within the FastFlow parallel programming framework, we describe the methodology and the implementation of a parallel Monte Carlo simulation infrastructure extended with user-defined on-line data filtering and mining functions. The simulator and the on-line analysis were validated on large multi-core platforms and representative proof-of-concept biological systems.
Keywords: bioinformatics, fastflow
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@inproceedings{cwcsim:onlinestats:ff:hibb:11,
volume = {7156},
author = {Marco Aldinucci and Mario Coppo and Ferruccio Damiani and Maurizio
Drocco and Eva Sciacca and Salvatore Spinella and Massimo Torquati
and Angelo Troina},
series = {LNCS},
keywords = {bioinformatics, fastflow},
booktitle = {Euro-Par 2011 Workshops, Proc. of the 2st Workshop on High
Performance Bioinformatics and Biomedicine (HiBB)},
editor = {Michael Alexander and Pasqua D'Ambra and Adam Belloum and George
Bosilca and Mario Cannataro and Marco Danelutto and Beniamino Di
Martino and Michael Gerndt and Emmanuel Jeannot and Raymond Namyst
and Jean Roman and Stephen L. Scott and Jesper Larsson Tr{\"a}ff and
Geoffroy Vall{\'e}e and Josef Weidendorfer},
url = {http://calvados.di.unipi.it/storage/paper_files/2012_onlinestat_HiBB2011.pdf},
title = {On Parallelizing On-Line Statistics for Stochastic Biological
Simulations},
abstract = {This work concerns a general technique to enrich parallel version
of stochastic simulators for biological systems with tools for
on-line statistical analysis of the results. In particular, within
the FastFlow parallel programming framework, we describe the
methodology and the implementation of a parallel Monte Carlo
simulation infrastructure extended with user-defined on-line data
filtering and mining functions. The simulator and the on-line
analysis were validated on large multi-core platforms and
representative proof-of-concept biological systems.},
address = {Bordeaux, France},
publisher = {Springer},
year = {2012},
pages = {3-12},
}
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