Chronological Overview 
 Type-Hierarchical Overview 
Formal Methods in Computing
(Most of the papers antecedent to 1995
are not included in the list)
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cwcsim:onlinestats:ff:hibb:11 (In proceedings)
Author(s) Marco Aldinucci, Mario Coppo, Ferruccio Damiani, Maurizio Drocco, Eva Sciacca, Salvatore Spinella, Massimo Torquati and Angelo Troina
Title« On Parallelizing On-Line Statistics for Stochastic Biological Simulations »
InEuro-Par 2011 Workshops, Proc. of the 2st Workshop on High Performance Bioinformatics and Biomedicine (HiBB)
SeriesLNCS
Editor(s) Michael Alexander, Pasqua D'Ambra, Adam Belloum, George Bosilca, Mario Cannataro, Marco Danelutto, Beniamino Di Martino, Michael Gerndt, Emmanuel Jeannot, Raymond Namyst, Jean Roman, Stephen L. Scott, Jesper Larsson Träff, Geoffroy Vallée and Josef Weidendorfer
Volume7156
Page(s)3-12
Year2012
PublisherSpringer
AddressBordeaux, France
URLhttp://calvados.di.unipi.it/storage/paper_files/2012_onlinestat_HiBB2011.pdf
Abstract & Keywords
This work concerns a general technique to enrich parallel version of stochastic simulators for biological systems with tools for on-line statistical analysis of the results. In particular, within the FastFlow parallel programming framework, we describe the methodology and the implementation of a parallel Monte Carlo simulation infrastructure extended with user-defined on-line data filtering and mining functions. The simulator and the on-line analysis were validated on large multi-core platforms and representative proof-of-concept biological systems.

Keywords: bioinformatics, fastflow

BibTeX code

@inproceedings{cwcsim:onlinestats:ff:hibb:11,
  volume = {7156},
  author = {Marco Aldinucci and Mario Coppo and Ferruccio Damiani and Maurizio
            Drocco and Eva Sciacca and Salvatore Spinella and Massimo Torquati
            and Angelo Troina},
  series = {LNCS},
  keywords = {bioinformatics, fastflow},
  booktitle = {Euro-Par 2011 Workshops, Proc. of the 2st Workshop on High
               Performance Bioinformatics and Biomedicine (HiBB)},
  editor = {Michael Alexander and Pasqua D'Ambra and Adam Belloum and George
            Bosilca and Mario Cannataro and Marco Danelutto and Beniamino Di
            Martino and Michael Gerndt and Emmanuel Jeannot and Raymond Namyst
            and Jean Roman and Stephen L. Scott and Jesper Larsson Tr{\"a}ff and
            Geoffroy Vall{\'e}e and Josef Weidendorfer},
  url = {http://calvados.di.unipi.it/storage/paper_files/2012_onlinestat_HiBB2011.pdf},
  title = {On Parallelizing On-Line Statistics for Stochastic Biological
           Simulations},
  abstract = {This work concerns a general technique to enrich parallel version
              of stochastic simulators for biological systems with tools for
              on-line statistical analysis of the results. In particular, within
              the FastFlow parallel programming framework, we describe the
              methodology and the implementation of a parallel Monte Carlo
              simulation infrastructure extended with user-defined on-line data
              filtering and mining functions. The simulator and the on-line
              analysis were validated on large multi-core platforms and
              representative proof-of-concept biological systems.},
  address = {Bordeaux, France},
  publisher = {Springer},
  year = {2012},
  pages = {3-12},
}


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